PMID: 10200178

 

    Legend: Gene, Sites

Title : Site-specific characterization of the N-linked glycans of murine prion protein by high-performance liquid chromatography/electrospray mass spectrometry and exoglycosidase digestions

Abstract :
  1. The murine prion protein PrP gene encodes a protein of 254 amino acids with two consensus sites for Asn-linked glycosylation at codons 180 and 196
  2. A partial site-specific study of the N-linked glycans from hamster PrP has previously been carried out by mass spectrometry [Stahl, N. , Baldwin , M. A., Teplow, D. B., Hood, L., Gibson, B. W., Burlingame, A. L., and Prusiner, S. B. (1993) Biochemistry 32, 1991-2002] and revealed that the glycosylation at Asn-181 (equivalent to mouse 180) is heterogeneous, comprising over 30 glycoforms
  3. The identification of the glycosylated peptide spanning Asn-197 was not reported
  4. Recent technical advances in electrospray mass spectrometry now provide the sensitivity to detect low femtomole quantities of glycopeptides with >5000 mass resolution and 30 ppm mass measurement [Medzihradszky, K. F., Besman, M. J., and Burlingame, A. L. (1998) Rapid Commun
  5. Mass Spectrom
  6. 12, 472-478]
  7. This performance coupled with stepwise exoglycosidase digestion has been employed to establish the differential nature of the structural complexity (glycoforms) of the glycans at Asn-180 and Asn-196 from a single strain infected with the ME7 strain
  8. Some sixty structures have been found characterized by neutral and sialylated bi-, tri-, and tetraantennary complex-type bearing outer-arm alpha(1-3)-fucosylation (the Lewisx and sialyl-Lewisx epitopes), core alpha(1,6) fucosylation, and the presence of terminal HexNAc residues
  9. The Lewisx trisaccharide is the major nonreducing structure at Asn-180 , and significant amounts of both Lewisx and sialyl Lewisx epitopes are observed at Asn-196
  10. The abundance of the Lewisx and sialyl Lewisx epitopes on murine PrPSc may indicate a role for these structures in the normal function of PrPC or the pathophysiology of PrPSc
Output (sent_index, trigger, protein, sugar, site):
  • 0. protein, , protein, the N-linked glycans, -
  • 10. epitopes, , PrPSc, epitopes, -
  • 2. PrP, , PrP, the N-linked glycans, -
  • 2. glycosylation, , -, -, Asn-181
  • 3. glycosylated, , -, -, Asn-197
  • 4. glycopeptides, , -, -, glycopeptides
  • 7. Asn-180, , -, the glycans, Asn-180 and Asn-196
  • 7. Asn-196, , -, the glycans, Asn-180 and Asn-196
  • 8. -fucosylation, , -, terminal HexNAc residues, -
  • 8. fucosylation, , -, terminal HexNAc residues, -
  • 8. sialylated, , -, neutral and sialylated bi-, -
  • 9. Asn-180, , -, The Lewisx trisaccharide, Asn-180
  • 9. epitopes, , -, both Lewisx and sialyl Lewisx epitopes, -
  • 9. observed, , -, both Lewisx and sialyl Lewisx epitopes, Asn-196
Output(Part-Of) (sent_index, protein, site):
*Output_Site_Fusion* (sent_index, protein, sugar, site):
  • 2. PrP, -, Asn-181
  • 3. PrP, -, Asn-197
  • 7. PrP, the glycans, Asn-180 and Asn-196
  • 9. PrP, The Lewisx trisaccharide, Asn-180
  • 9. PrP, both Lewisx and sialyl Lewisx epitopes, Asn-196

 

 

Protein NCBI ID SENTENCE INDEX
PrPSc 19122 10
PrPC 19122 10