PMID: 12878160

 

    Legend: Gene, Sites

Title : VIPL , a VIP36-like membrane protein with a putative function in the export of glycoproteins from the endoplasmic reticulum

Abstract :
  1. Subsets of glycoproteins are thought to require lectin-like membrane receptors for efficient export out of the endoplasmic reticulum (ER)
  2. To identify new members related to two previously characterized intracellular lectins ERGIC-53 / p58 and VIP36 , we carried out an extensive database search using the conserved carbohydrate recognition domain (CRD) as a search string
  3. A gene, more closely related to VIP36 than to ERGIC-53 / p58 , and hence called VIPL ( VIP36-Like ), was identified
  4. VIPL has been conserved through evolution from zebra fish to man
  5. The 2.4-kb VIPL mRNA was widely expressed to varying levels in different tissues
  6. Using an antiserum prepared against the CRD, the 32-kDa VIPL protein was detected in various cell lines
  7. The single N-linked glycan of VIPL remained endoglycosidase H-sensitive during a 2-h pulse-chase, even when the protein was overexpressed or mutated to allow export to the plasma membrane
  8. VIPL localized primarily to the ER and partly to the Golgi complex
  9. Like VIP36 , the cytoplasmic tail of VIPL terminates in the sequence KRFY, a motif characteristic for proteins recycling between the ER and ERGIC/ cis-Golgi
  10. Mutating the retrograde transport signal KR to AA resulted in transport of VIPL to the cell surface
  11. Finally, knock-down of VIPL mRNA using siRNA significantly slowed down the secretion of two glycoproteins (M(R) 35 and 250 kDa) to the medium, suggesting that VIPL may also function as an ER export receptor
Output (sent_index, trigger, protein, sugar, site):
  • 0. glycoproteins, , glycoproteins, -, -
  • 1. glycoproteins, , glycoproteins, -, -
  • 11. glycoproteins, , glycoproteins, -, -
  • 7. VIPL, , VIPL, The single N-linked glycan, -
Output(Part-Of) (sent_index, protein, site):
  • 9. VIPL, tail
*Output_Site_Fusion* (sent_index, protein, sugar, site):

 

 

Protein NCBI ID SENTENCE INDEX
VIP36-like 81562 0
ERGIC-53 3998 2,3
VIPL mRNA 81562 5
VIP36-Like 81562 3
VIP36 10960 2,3
Like VIP36 10960 9
VIPL protein 81562 6
VIPL 81562 0,3,4,7,8,9,10,11