PMID: 15254193

 

    Legend: Gene, Sites

Title : Characterization of the murine alpha interferon gene family

Abstract :
  1. Mouse and human genomes carry more than a dozen genes coding for closely related alpha interferon (IFN-alpha ) subtypes
  2. IFN-alpha , as well as IFN-beta , IFN-kappa , IFN-epsilon , and limitin , are thought to bind the same receptor , raising the question of whether different IFN subtypes possess specific functions
  3. As some confusion existed in the identity and characteristics of mouse IFN-alpha subtypes, the availability of data from the mouse genome sequence prompted us to characterize the murine IFN-alpha family
  4. A total of 14 IFN-alpha genes were detected in the mouse genome, in addition to three IFN-alpha pseudogenes
  5. Four IFN-alpha genes ( IFN-alpha1 , IFN-alpha7 /10, IFN-alpha8 /6, and IFN-alpha11 ) exhibited surprising allelic divergence between 129/Sv and C57BL/6 mice
  6. All IFN-alpha subtypes were found to be stable at pH 2 and to exhibit antiviral activity
  7. Interestingly, some IFN subtypes ( IFN-alpha4 , IFN-alpha11 , IFN-alpha12 , IFN-beta , and limitin ) showed higher biological activity levels than others, whereas IFN-alpha7 /10 exhibited lower activity
  8. Most murine IFN-alpha turned out to be N-glycosylated
  9. However, no correlation was found between N-glycosylation and activity
  10. The various IFN-alpha subtypes displayed a good correlation between their antiviral and antiproliferative potencies, suggesting that IFN-alpha subtypes did not diverge primarily to acquire specific biological activities but probably evolved to acquire specific expression patterns
  11. In L929 cells, IFN genes activated in response to poly(I*C) transfection or to viral infection were, however, similar
Output (sent_index, trigger, protein, sugar, site):
  • 8. N-glycosylated, , IFN-alpha, -, -
Output(Part-Of) (sent_index, protein, site):
*Output_Site_Fusion* (sent_index, protein, sugar, site):

 

 

Protein NCBI ID SENTENCE INDEX
IFN-kappa 387510 2
IFN-alpha 111654 2,3,4,8,10
IFN-beta 15977 2,7
IFN-alpha11 15964 5,7
IFN-epsilon 230405 2
14 IFN-alpha 111654 4
IFN-alpha4 15967 7
IFN-alpha7 15970 5,7
IFN-alpha8 15969 5
IFN-alpha1 15962 5
alpha interferon (IFN-alpha 3439 1
Four IFN-alpha 111654 5
IFN-alpha12 242519 7