PMID: 15477100

 

    Legend: Gene, Sites

Title : Crystallographic studies of ligand binding by Zn-alpha2-glycoprotein

Abstract :
  1. Zn-alpha2-glycoprotein ( ZAG ) is a 41 kDa soluble protein that is present in most bodily fluids
  2. The previously reported 2.8 A crystal structure of ZAG isolated from human serum demonstrated the structural similarity between ZAG and class I major histocompatibility complex (MHC) molecules and revealed a non-peptidic ligand in the ZAG counterpart of the MHC peptide-binding groove
  3. Here we present crystallographic studies to explore further the nature of the non-peptidic ligand in the ZAG groove
  4. Comparison of the structures of several forms of recombinant ZAG , including a 1.95 A structure derived from ZAG expressed in insect cells, suggests that the non-peptidic ligand in the current structures and in the structure of serum ZAG is a polyethylene glycol ( PEG ), which is present in the crystallization conditions used
  5. Further support for PEG binding in the ZAG groove is provided by the finding that PEG displaces a fluorophore-tagged fatty acid from the ZAG binding site
  6. From these results we hypothesize that our purified forms of ZAG do not contain a bound endogenous ligand, but that the ZAG groove is capable of binding hydrophobic molecules, which may relate to its function
Output (sent_index, trigger, protein, sugar, site):
  • 0. Zn-alpha2-glycoprotein, , Zn-alpha2-glycoprotein, -, -
  • 1. Zn-alpha2-glycoprotein, , ZAG, -, -
  • 1. Zn-alpha2-glycoprotein, , Zn-alpha2-glycoprotein, -, -
  • 1. Zn-alpha2-glycoprotein, , protein, -, -
Output(Part-Of) (sent_index, protein, site):
  • 5. ZAG, site
*Output_Site_Fusion* (sent_index, protein, sugar, site):

 

 

Protein NCBI ID SENTENCE INDEX
structure of ZAG 563 2
ZAG 563 1,2,3,4,5,6
Zn-alpha2-glycoprotein 563 0,1