PMID: 2049076

 

    Legend: Gene, Sites

Title : Natural human interferon-alpha 2 is O-glycosylated

Abstract :
  1. Natural human interferon alpha 2 2 (IFN-alpha 2 ) was isolated from a preparation of partially purified human leucocyte IFN by monoclonal-antibody immunoaffinity chromatography
  2. The purified protein had a specific activity of 1.5 x 10(8) i.u./mg; it was estimated to constitute 10-20% of the total antiviral activity of leucocyte IFN
  3. N-Terminal amino-acid-sequence analysis identified the subspecies IFN-alpha 2b and/or IFN-alpha 2c, whereas IFN-alpha 2a was not detectable
  4. The structure of natural IFN-alpha 2 was found to differ from that of its recombinant (Escherichia coli-derived) equivalent
  5. First, reverse-phase h.p.l.c. showed that natural IFN-alpha 2 was significantly more hydrophilic then expected
  6. Secondly, the apparent molecular mass of the natural protein determined by SDS /PAGE was higher than that of recombinant IFN-alpha 2 ; incubation under mild alkaline conditions known to eliminate O-linked carbohydrates resulted in a reduction of the apparent molecular mass to that of the recombinant protein
  7. On sequence analysis of proteolytic peptides, Thr-106 was found to be modified
  8. These results suggested that Thr-106 of natural IFN-alpha 2 carries O-linked carbohydrates
  9. Reverse-phase h.p.l.c. as well as SDS /PAGE of natural IFN-alpha 2 showed that glycosylation is heterogeneous
  10. For characterization of the carbohydrate moieties, the protein was treated with neuraminidase and/or O-glycanase and analysed by gel electrophoresis; in addition, glycopeptides obtained by proteinase digestion and separated by h.p.l.c. were characterized by sequence analysis and m.s. Further information on the com position of the glycans was obtained by monosaccharide analysis
  11. The results indicate that natural IFN-alpha 2 contains the disaccharide galactosyl-N-acetylgalactosamine (Gal-GalNAc) linked to Thr-106
  12. In part of the molecules, this core carbohydrate carries (alpha-)N-acetylneuraminic acid, whereas a disaccharide, probably N-acetyl-lactosamine, is bound to Gal-GalNAc in another proportion of the protein
  13. Further glycosylation isomers are present in small amounts
  14. As IFN-alpha 2 is the only IFN-alpha species with a threonine residue at position 106 , it may represent the only O-glycosylated human IFN-alpha protein
Output (sent_index, trigger, protein, sugar, site):
  • 0. O-glycosylated, , interferon-alpha 2, -, -
  • 10. glycopeptides, , -, -, glycopeptides
  • 14. O-glycosylated, , IFN-alpha protein, -, -
  • 8. carries, , IFN-alpha 2, O-linked carbohydrates, Thr-106
Output(Part-Of) (sent_index, protein, site):
  • 8. IFN-alpha 2, Thr-106
*Output_Site_Fusion* (sent_index, protein, sugar, site):
  • 8. IFN-alpha 2, O-linked carbohydrates, Thr-106

 

 

Protein NCBI ID SENTENCE INDEX
interferon alpha 2 3440 1
IFN-alpha 2 3440 5,6,8,9,11,14
IFN-alpha 2a 3440 3
IFN-alpha 3440 14
IFN-alpha protein 3440 14
neuraminidase 4758 10
2 (IFN-alpha 2 3440 1
IFN 3439 1,2,3,4
interferon-alpha 2 3440 0