Title : Glycosylation analysis of
interleukin-23 receptor : elucidation of glycosylation
sites and characterization of attached glycan structures
Abstract :
- Interleukin-23 ( IL-23 ) is a heterodimeric cytokine, a central factor in chronic/autoimmune inflammation
- It signals through a heterodimeric receptor consisting of IL-23r , which is heavily glycosylated
- The structural characterization of IL-23r has not been reported
- In this work, glycosylation profiles of soluble recombinant human IL-23r ( rhIL-23r ) were established using mass spectrometry (MS), which included defining glycosylation sites , degree of glycosylation occupancy of each site and structure of attached oligosaccharides
- Specifically, precursor ion scan of oxonium ion protonated N-acetylglucosamine (GlcNAc(+)) (m/z 204) was performed using a triple quadrupole MS instrument to locate the retention time of glycopeptides
- Both the glycopeptides and their corresponding deglycosylated forms in each collected HPLC fraction were studied by liquid chromatography-tandem mass spectrometry (LC-MS/MS) (LTQ-Orbitrap) for glycosylation site profiling
- The attached glycan structures were elucidated by collision-induced dissociation ( CID ) fragmentation of target glycopeptides in combination with accurate mass measurement
- Eight glycosylation sites were identified on IL-23r ( Asn24, Asn209, Asn239, Asn157, Asn118, Asn250, Asn58 and Asn6 )
- Most of the glycosylation sites were > 95% occupied except Asn250 and Asn6
- Those two sites were 88% and 45% occupied by estimation from trypsin digestion and were 55% and 42% occupied from LysC digestion
- Multiple glycoforms were observed in IL-23r
- Most of them were bi-, tri- or tetra-antennary complex type structures with fucose and sialic acid
- High mannose and hybrid type glycans were only observed on Asn157
- The structural characterization on IL-23r glycosylation provides useful information for better understanding of the biological function of IL-23r
Output (sent_index, trigger,
protein,
sugar,
site):
- 0. glycosylation, , -, -, sites
- 13. observed, , -, High mannose, Asn157
- 13. observed, , -, hybrid type glycans, Asn157
- 2. glycosylated, , receptor, -, -
- 4. glycosylation, , -, attached oligosaccharides, sites
- 4. glycosylation, , IL-23r, -, -
- 4. glycosylation, , rhIL-23r, -, -
- 4. occupancy, , -, -, site
- 5. glycopeptides, , -, -, glycopeptides
- 6. glycopeptides, , -, -, glycopeptides
- 6. glycosylation, , -, -, site
- 7. glycopeptides, , -, -, glycopeptides
- 8. glycosylation, , -, -, sites
- 8. identified, , -, -, Asn24, Asn209, Asn239, Asn157, Asn118, Asn250, Asn58 and Asn6
- 9. glycosylation, , -, -, sites
Output(Part-Of) (sent_index,
protein,
site):
*Output_Site_Fusion* (sent_index,
protein,
sugar,
site):
- 13. interleukin-23 receptor, High mannose, Asn157
- 13. interleukin-23 receptor, hybrid type glycans, Asn157
- 8. interleukin-23 receptor, -, Asn24, Asn209, Asn239, Asn157, Asn118, Asn250, Asn58 and Asn6