PMID: PMC6243375-1-fig2

 

    Legend: Gene, Sites

Title : Mapping of O‐linked glycoproteome Workflow to map site‐specific O‐linked glycoproteome in human samples

Abstract :

1. Distribution of EXoO identified peptides in different samples
2. Unsupervised hierarchical clustering of samples and PSM number of peptides to show that EXoO identified peptides exhibited different distribution and relative abundance in samples
3. Euclidean distance and city block distance were used for clustering of samples and peptides, respectively
4. Analysis of amino acid sequence surrounding O‐linked glycosylation sites
5. Cellular component analysis of O‐linked glycoproteins
6. Landscape distribution of the O‐linked glycosylation sites and its frequency in proteins
7. Relative position was calculated using amino acid position of the sites to divide total number of amino acids of the protein and time a hundred to show in percentage
8. Lower panel: Relative position of the sites in proteins
9. Proteins with positions close to protein N‐termini were ranked to the top
10. Middle panel: Relative position of sites in five proteins with the highest number of sites
11. Protein with higher number of sites was ranked to the top
12. Upper panel: Frequency of the sites in proteins
13. The y‐axis of upper panel shows the number of sites at the relative position of proteins

Output (sent_index, trigger, protein, sugar, site):

• 4. glycosylation, , -, -, sites
• 5. glycoproteins, , glycoproteins, -, -
• 6. glycosylation, , -, -, sites

Output(Part-Of) (sent_index, protein, site):

• 10. proteins, position
• 13. proteins, position
• 8. proteins, position

*Output_Site_Fusion* (sent_index, protein, sugar, site):

 

Protein	NCBI ID	SENTENCE INDEX